Molecular dynamics simulation of halogen bonding in Cl2, BrCl, and mixed Cl2/Br2 clathrate hydrates

  1. Get@NRC: Molecular dynamics simulation of halogen bonding in Cl2, BrCl, and mixed Cl2/Br2 clathrate hydrates (Opens in a new window)
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Journal titleCanadian Journal of Chemistry
Pages864873; # of pages: 10
SubjectBromine; Chemical bonds; Chlorine; Crystal structure; Distribution functions; Hydration; Lattice constants; Molecular dynamics; Molecules; Oxygen; Quantum chemistry; Single crystals; Van der Waals forces; X ray diffraction; Clathrate hydrate; Electrostatic potentials; Halogen bonding; Molecular dynamics simulations; Quantum chemical computations; Radial distribution functions; Single crystal x-ray diffraction; Van der Waals radius; Hydrates
AbstractClathrate hydrate phases of dihalogen molecules have properties that differ from those of other guest molecules of similar size. The water oxygen-chlorine distances in the structure I (sI) Cl2 hydrate are smaller than the sum of the van der Waals radii of oxygen and chlorine. Bromine hydrate forms a unique clathrate hydrate structure that is not seen in other guest substances. In mixed Cl2/Br2 structure I hydrate, the water oxygen-bromine distances are also smaller than the sum of the oxygen and bromine van der Waals radii. We previously studied the structure of three dihalogen clathrate hydrates using single crystal X-ray diffraction and described these structural features in terms of halogen bonding between the dihalogen and water molecules. In this work, we perform molecular dynamics simulations of cubic sI Cl2, mixed Cl2/Br2, and BrCl clathrate hydrate phases. We perform quantum chemical computations on the dihalogen molecules to determine the nature of σ-hole near the halogen atoms. We fit the electrostatic potential of the molecules to point charge models including dummy atoms that represent σ-holes adjacent to the halogen molecules. Molecular dynamics simulations are used to determine the lattice constants, radial distribution functions, and guest dynamics in these phases. We determine the effect of guest size and difference in halogen bonding on the properties of the clathrate hydrate phase. Simulations for the Cl2, BrCl, and mixed Cl2/Br2 hydrates are performed with small cages of the sI clathrate hydrate phases completely full or filled with experimental occupancies with Cl2 guests.
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PublisherCanadian Science Publishing
AffiliationNational Research Council Canada; Security and Disruptive Technologies
Peer reviewedYes
NPARC number21277410
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Record identifier72be8dad-e68d-43bb-bc3a-068d15d344e6
Record created2016-03-09
Record modified2016-05-09
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