Towards Inter- and Intra- Cellular Protein Interaction Analysis: Applying the Betweenness Centrality Graph Measure for Node Importance

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Proceedings titleAMMCS-2011: INTERNATIONAL CONFERENCE ON APPLIED MATHEMATICS, MODELING AND COMPUTATIONAL SCIENCE: Advances in Mathematical and Computational Methods: Addressing Modern Challenges of Science, Technology, and Society
Series titleAIP Conference Proceedings; Volume 1368
ConferenceInternational Conference on Applied Mathematics, Modeling and Computational Science (AMMCS), Waterloo, Ontario, Canada, July 25-29, 2011, Waterloo, Ontario
SubjectProtein-protein Interactions; Relevant Proteins; Network Analysis; Betweenness Centrality; Cancer; Blood-Brain Barrier
AbstractThree public biological network data sets (KEGG, GeneRIF and Reactome) are collected and described. Two problems are investigated (inter- and intra- cellular interactions) via augmentation of the collected networks to the problem specific data. Results include an estimate of the importance of proteins for the interaction of inflammatory cells with the bloodbrain barrier via the computation of Betweenness Centrality. Subsequently, the interactions may be validated from a number of differing perspectives; including comparison with (i) existing biological results, (ii) the literature, and (iii) new hypothesis driven biological experiments. Novel therapeutic and diagnostic targets for inhibiting inflammation at the blood-brain barrier in a number of brain diseases including Alzheimer’s disease, stroke and multiple sclerosis are possible. In addition, this methodology may also be applicable towards investigating the breast cancer tumour microenvironment.
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AffiliationNRC Institute for Information Technology; NRC Institute for Biological Sciences; National Research Council Canada
Peer reviewedYes
NPARC number18608905
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Record identifier3eb6f465-0ee6-4d69-a072-aeeadc9e6598
Record created2011-09-21
Record modified2016-05-09
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